FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005308459

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308459
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42984710
Sequences flagged as poor quality0
Sequence length28
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGA1610150.37458668442802107No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC1403550.32652308227739585No Hit
CGTTCGTTATCGGAATTAACCAGACAAA1395940.3247526853153133No Hit
CCACCTACTAAGAACGGCCATGCACCAC1332340.30995672647320405No Hit
CCCTCCTAATCATGGCCTCAGTTCCGAA1041610.2423210485775058No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT1019950.237282047500146No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG970550.22578958890265866No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT861100.20032704652421757No Hit
GTGGGCAAATTTAAAGTTGAACTAAGAT674270.1568627542212103No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT642420.14945314275704083No Hit
ACGGCCATGCACCACCACCCACGGAATC631810.1469848232080663No Hit
GTGCGGTGTGTACAAAGGGCAGGGACTT624000.1451678980735243No Hit
GAGTCCGTCTTGCGCCGGTCCAAGAATT588780.13697428690341287No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA534860.12443029160834167No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA533540.1241232056701092No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTT503410.11711373648909111No Hit
TGCCCTACAATGGATCCTCGTTAAAGGA498440.11595751140347348No Hit
GCAGCCATACTCCCCCCGGAACCCAAAG489920.11397541125670034No Hit
CCACCAACTAAGAACGGCCATGCACCAC468740.10904807779324323No Hit
TACGGGCGGTGTGTACAAAGGGCAGGGA443880.10326462595653199No Hit
CGTTGGGTTGACAGTGAGGGTAATAATG435570.1013313803908413No Hit
TTCGGTCTTGATTAATGAAAACATTCTT432680.10065904829880205No Hit

[OK]Adapter Content

Adapter graph