FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005308461

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308461
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44785932
Sequences flagged as poor quality0
Sequence length28
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGA1697110.3789381897869179No Hit
CGTTCGTTATCGGAATTAACCAGACAAA1455850.32506859520083226No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC1446440.3229674889873901No Hit
CCACCTACTAAGAACGGCCATGCACCAC1395190.3115241634359647No Hit
CCCTCCTAATCATGGCCTCAGTTCCGAA1124340.25104758342418776No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT1069290.23875577714894936No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG1030410.2300744796379363No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT900860.20114798548794294No Hit
GTGGGCAAATTTAAAGTTGAACTAAGAT701270.15658265189166992No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT670150.1496340413324434No Hit
GTGCGGTGTGTACAAAGGGCAGGGACTT660490.14747711401875035No Hit
ACGGCCATGCACCACCACCCACGGAATC651080.14537600780530816No Hit
GAGTCCGTCTTGCGCCGGTCCAAGAATT611320.13649822002141207No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA574500.12827688837646609No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA562180.12552602455610393No Hit
TGCCCTACAATGGATCCTCGTTAAAGGA542550.12114295176440673No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTT522940.11676434466072962No Hit
GCAGCCATACTCCCCCCGGAACCCAAAG518950.11587343990072597No Hit
CCACCAACTAAGAACGGCCATGCACCAC481790.1075761915594388No Hit
TACGGGCGGTGTGTACAAAGGGCAGGGA463470.10348562133305611No Hit
CGTTGGGTTGACAGTGAGGGTAATAATG458750.10243171896031995No Hit
TTCGGTCTTGATTAATGAAAACATTCTT451840.1008888237493863No Hit

[OK]Adapter Content

Adapter graph