FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005308473

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308473
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36919644
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGA1522270.41231979376615874No Hit
CGTTCGTTATCGGAATTAACCAGACAAA1180870.31984869626586865No Hit
CCACCTACTAAGAACGGCCATGCACCAC1096970.2971236667395818No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC991630.2685914306215954No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT798280.2162209364749021No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG722450.19568173517599466No Hit
CCCTCCTAATCATGGCCTCAGTTCCGAA694690.18816270276062252No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT687110.18610959520628098No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT614860.1665400673960995No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA548590.1485902735140133No Hit
ACGGCCATGCACCACCACCCACGGAATC523400.14176734748579917No Hit
GTGGGCAAATTTAAAGTTGAACTAAGAT502590.1361307817594341No Hit
TTCGGTCTTGATTAATGAAAACATTCTT470150.1273441314872917No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTT452270.12250118121399003No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA429110.11622809797407581No Hit
GCTGCTTTTAGGCCTACTATGGGTGTTA411230.11138514770077414No Hit
GGGCATCGTTTATGGTCGGAACTACGAC404030.10943496638266609No Hit
CCACCAACTAAGAACGGCCATGCACCAC399890.10831361212475397No Hit
GGGCATCACAGACCTGTTATTGCTCAAT395810.10720850937782607No Hit
TGCCCTACAATGGATCCTCGTTAAAGGA375820.1017940476349122No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)