FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005308483

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308483
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences75518197
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGA3039930.40254271430765226No Hit
CCACCTACTAAGAACGGCCATGCACCAC2816640.3729750062756398No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC2045600.27087511106760137No Hit
CGTTCGTTATCGGAATTAACCAGACAAA1787080.23664230225199898No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG1541780.20416006489137975No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT1424730.18866048933874838No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT1285300.17019738964371725No Hit
TTCGGTCTTGATTAATGAAAACATTCTT1100630.1457436808243714No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT1096790.14523519410824917No Hit
CCCTCCTAATCATGGCCTCAGTTCCGAA1070410.14174199630322212No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA1018790.13490655768701681No Hit
GTGGGCAAATTTAAAGTTGAACTAAGAT1004580.13302489200053333No Hit
ACGGCCATGCACCACCACCCACGGAATC941820.12471431223391098No Hit
TACGGGCGGTGTGTACAAAGGGCAGGGA921880.1220738890257139No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTT868750.11503849860186677No Hit
CGACCTTTAAGTTTCAGCTTTGCAACCA845350.11193990767549708No Hit
TGCCCTACAATGGATCCTCGTTAAAGGA836780.11080508185331808No Hit
CCACCAACTAAGAACGGCCATGCACCAC810710.10735293375714464No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)