FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005308485

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308485
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68220366
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACCTACTAAGAACGGCCATGCACCAC2551900.3740671810526493No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA2287680.33533681129767023No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC1794960.2631120448694163No Hit
CGTTCGTTATCGGAATTAACCAGACAAA1538810.22556460632298572No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT1028910.15082153033303866No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG1012550.14842341948150792No Hit
GCACTCTAATTTTTTCAAAGTAAACGCT881910.12927371277955327No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT837870.12281816254108048No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT825530.12100931853693075No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTT783920.11490996691515844No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA771080.1130278310145683No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA744600.1091462921790833No Hit
CCCTCCTAATCATGGCCTCAGTTCCGAA695820.10199593476235527No Hit
CATGCCTGTGTTGGGTTGACAGTGAGGG690500.10121610898422913No Hit
TGGCCAGAGTCTCGTTCGTTATCGGAAT687560.10078515263315943No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)