FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005308487

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308487
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70903672
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACCTACTAAGAACGGCCATGCACCAC2634360.37154070102321357No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA2407120.33949158514667616No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC1835850.25892171000678216No Hit
CGTTCGTTATCGGAATTAACCAGACAAA1609310.22697131962361555No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT1090050.1537367486411705No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG1070820.1510246183018561No Hit
GCACTCTAATTTTTTCAAAGTAAACGCT946410.13347827740148632No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT866350.12218690168825108No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT855740.12069050528158824No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA811940.11451311012495939No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTT808730.1140603832196448No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA783540.11050767582248772No Hit
CCCTCCTAATCATGGCCTCAGTTCCGAA741970.10464479188045438No Hit
CATGCCTGTGTTGGGTTGACAGTGAGGG723120.10198625538039835No Hit
TGGCCAGAGTCTCGTTCGTTATCGGAAT720570.10162661251169051No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)