FastQCFastQC Report
Sun 5 Jun 2022
EGAF00005308489

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308489
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences102730451
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGA2710010.2637981215520995No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC2442870.23779414732638524No Hit
CGTTCGTTATCGGAATTAACCAGACAAA2381690.23183875635861853No Hit
CCACCTACTAAGAACGGCCATGCACCAC1956170.19041773699601494No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG1792900.174524688887037No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT1777610.17303632785570075No Hit
GTGGGCAAATTTAAAGTTGAACTAAGAT1322640.12874858302724673No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA1269190.12354564665544006No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT1268460.12347458690705057No Hit
GCACTCTAATTTTTTCAAAGTAAACGCT1139000.11087267591183844No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)