FastQCFastQC Report
Thu 2 May 2024
EGAF00005308491

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308491
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences107574367
Total Bases3 Gbp
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGA2864190.266252089589335No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC2528320.2350299676873767No Hit
CGTTCGTTATCGGAATTAACCAGACAAA2509660.23329535371563004No Hit
CCACCTACTAAGAACGGCCATGCACCAC2034720.18914543089990946No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG1917510.17824971259184821No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT1875130.17431011237091454No Hit
GTGGGCAAATTTAAAGTTGAACTAAGAT1393430.12953178706596524No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA1328740.12351827271268072No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT1326200.1232821569844794No Hit
GCACTCTAATTTTTTCAAAGTAAACGCT1231440.11447336706150453No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)