FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005308505

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308505
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences105024367
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGA4436380.42241435266160665No Hit
CCACCTACTAAGAACGGCCATGCACCAC2317200.22063451236987697No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT1798790.17127358644303947No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT1766720.1682200093622083No Hit
CGTTCGTTATCGGAATTAACCAGACAAA1694720.16136445745014583No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT1682180.1601704488254616No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC1562880.14881118017116923No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG1276590.12155179188083085No Hit
TTCGGTCTTGATTAATGAAAACATTCTT1265800.12052441125400927No Hit
GTGGGCAAATTTAAAGTTGAACTAAGAT1184090.11274431199380615No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA1173270.11171407488702122No Hit
CCCTCCTAATCATGGCCTCAGTTCCGAA1113950.10606586183947196No Hit
GCACTCTAATTTTTTCAAAGTAAACGCT1101060.10483852761521524No Hit
GGCGACTTTTACTTCCTCTAGATAGTCA1091200.1038996978672578No Hit
TGACTTTTACTTCCTCTAGATAGTCAAG1055510.10050143887084795No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)