FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005308531

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308531
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70686651
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACCTACTAAGAACGGCCATGCACCAC2632240.3723814840230583No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA2390680.3382081292831372No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC1836080.25974918517500567No Hit
CGTTCGTTATCGGAATTAACCAGACAAA1597990.2260667293461109No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG1076740.1523257906220511No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT1069270.15126901400378975No Hit
GCACTCTAATTTTTTCAAAGTAAACGCT936370.13246772718090719No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT868180.12282092696681868No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT861420.12186459364159152No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA808550.11438510504621303No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTT804510.11381356856190569No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA779150.11022590389803587No Hit
CCCTCCTAATCATGGCCTCAGTTCCGAA736990.10426155286377904No Hit
CATGCCTGTGTTGGGTTGACAGTGAGGG723460.10234747151905668No Hit
TGGCCAGAGTCTCGTTCGTTATCGGAAT719390.10177169095194508No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)