FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005308535

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308535
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71381313
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACCTACTAAGAACGGCCATGCACCAC2654680.3719012565655664No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA2421380.33921763249157383No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC1858430.2603524538698244No Hit
CGTTCGTTATCGGAATTAACCAGACAAA1620610.22703561084677723No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG1098410.15387920925466866No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT1083530.15179463005955074No Hit
GCACTCTAATTTTTTCAAAGTAAACGCT944170.13227131308161844No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT874940.12257269630218207No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT866400.12137630474799475No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA813500.11396540156105002No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTT807090.11306740743197033No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA785690.11006942391210987No Hit
CCCTCCTAATCATGGCCTCAGTTCCGAA741880.10393196325766661No Hit
TGGCCAGAGTCTCGTTCGTTATCGGAAT729920.10225645471105302No Hit
CATGCCTGTGTTGGGTTGACAGTGAGGG727570.10192723689461974No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)