FastQCFastQC Report
Wed 11 May 2022
EGAF00005308537

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308537
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences107015003
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGA2854440.26673269354578255No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC2528510.23627621633575996No Hit
CGTTCGTTATCGGAATTAACCAGACAAA2497200.2333504583464806No Hit
CCACCTACTAAGAACGGCCATGCACCAC2036930.1903406011211344No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG1918930.17931410981691978No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT1857400.1735644487156628No Hit
GTGGGCAAATTTAAAGTTGAACTAAGAT1385190.12943886008207653No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA1333790.1246357952258339No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT1322030.12353688388907488No Hit
GCACTCTAATTTTTTCAAAGTAAACGCT1219230.1139307541765896No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)