FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005308539

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308539
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56835634
Sequences flagged as poor quality0
Sequence length28
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGA1340080.23578165768327664No Hit
CGTTCGTTATCGGAATTAACCAGACAAA1138510.20031623118693462No Hit
CCACCTACTAAGAACGGCCATGCACCAC889780.15655319337160908No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA812630.14297896281054945No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT736950.12966337280587034No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)