FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005308605

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308605
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37260681
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGA1528050.41009717455244576No Hit
CGTTCGTTATCGGAATTAACCAGACAAA1191260.31970966928918987No Hit
CCACCTACTAAGAACGGCCATGCACCAC1113290.2987841258188491No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC1007280.27033322337828447No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT800120.21473574248414834No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG737400.1979029851869857No Hit
CCCTCCTAATCATGGCCTCAGTTCCGAA707180.18979255907856327No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT695960.18678134197278898No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT622550.16707960866308375No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA556020.14922432577117953No Hit
ACGGCCATGCACCACCACCCACGGAATC536200.14390504564315398No Hit
GTGGGCAAATTTAAAGTTGAACTAAGAT503880.1352310227502283No Hit
TTCGGTCTTGATTAATGAAAACATTCTT475360.12757684165783229No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTT456010.12238369985776697No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA430480.11553197323473502No Hit
GCTGCTTTTAGGCCTACTATGGGTGTTA412420.11068504088800739No Hit
GGGCATCGTTTATGGTCGGAACTACGAC411160.11034688281730547No Hit
CCACCAACTAAGAACGGCCATGCACCAC405810.10891105291392822No Hit
GGGCATCACAGACCTGTTATTGCTCAAT397960.10680427445757096No Hit
TGCCCTACAATGGATCCTCGTTAAAGGA384740.10325629850941263No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)