FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005308611

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308611
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences118368848
Sequences flagged as poor quality0
Sequence length28
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACAAA5923270.5004078437934955No Hit
CCACCTACTAAGAACGGCCATGCACCAC3057170.25827487989069553No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG2794570.2360899888119212No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA1960440.1656212790040839No Hit
CCACCAACTAAGAACGGCCATGCACCAC1889860.15965856151611782No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC1854000.15662904821038723No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA1754390.1482138273407882No Hit
GATCGGAAGAGCACACGTCTGAACTCCA1409900.11911073089095198Illumina Multiplexing PCR Primer 2.01 (100% over 28bp)
CCCTCCTAATCATGGCCTCAGTTCCGAA1204290.10174045117005785No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)