FastQCFastQC Report
Thu 12 May 2022
EGAF00005308613

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308613
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences117779467
Sequences flagged as poor quality0
Sequence length28
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACAAA5897860.5007545160651814No Hit
CCACCTACTAAGAACGGCCATGCACCAC3045130.25854506541450045No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG2812330.23877931116804935No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA1938710.1646050919894212No Hit
CCACCAACTAAGAACGGCCATGCACCAC1902920.16156636198735727No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC1873030.15902856819686575No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA1748500.1484554179549819No Hit
GATCGGAAGAGCACACGTCTGAACTCCA1390050.11802142049089084Illumina Multiplexing PCR Primer 2.01 (100% over 28bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)