FastQCFastQC Report
Thu 16 Jun 2022
EGAF00005308633

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308633
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences139251815
Sequences flagged as poor quality0
Sequence length28
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACAAA4570740.3282355781143679No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG4358530.3129962794380813No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA4060380.2915854274502634No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA3413550.24513504545703768No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC3261550.23421956834099433No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT2558090.18370245299854798No Hit
CCACCTACTAAGAACGGCCATGCACCAC2530330.18170894217788114No Hit
GGGCATCACAGACCTGTTATTGCTCAAT1987640.14273709825613404No Hit
CCCTCCTAATCATGGCCTCAGTTCCGAA1831010.13148912996214807No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT1605910.11532417010148126No Hit
CCACCAACTAAGAACGGCCATGCACCAC1604340.11521142471284844No Hit
GTGCGGTGTGTACAAAGGGCAGGGACTT1435630.10309596323753482No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)