FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005308645

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308645
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences75027410
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACCTACTAAGAACGGCCATGCACCAC2722220.362830064372474No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA2350240.31325085058913804No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC2317810.30892843028967676No Hit
CGTTCGTTATCGGAATTAACCAGACAAA1578330.21036711783067016No Hit
CCCTCCTAATCATGGCCTCAGTTCCGAA1537020.204861130085658No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTT1389390.18518432130337434No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG1349850.1799142473397389No Hit
GTGGGCAAATTTAAAGTTGAACTAAGAT1121080.1494227243083561No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT1118970.14914149375541552No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT1013490.1350826318008312No Hit
ACGGGCTTTTTAACTGCAGCAACTTTAA1003320.133727127192582No Hit
CCACCAACTAAGAACGGCCATGCACCAC976030.13008978985146896No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA890060.11863131087691818No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT873570.11643344745606973No Hit
CGTTGGGTTGACAGTGAGGGTAATAATG868910.1158123411164No Hit
GAGTCCGTCTTGCGCCGGTCCAAGAATT863340.11506994577048575No Hit
GCTGCTTTTAGGCCTACTATGGGTGTTA797950.10635446432177255No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA786870.10487767070727885No Hit
CCTCTATATAAATGCGTAGGGGTTTTAG776770.10353149602258693No Hit
GGGCATCACAGACCTGTTATTGCTCAAT776240.10346085517279617No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)