FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005308647

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308647
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74572726
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACCTACTAAGAACGGCCATGCACCAC2705130.36275058524748044No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA2336490.3133169625581342No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC2295270.307789472521093No Hit
CGTTCGTTATCGGAATTAACCAGACAAA1558830.20903486886076822No Hit
CCCTCCTAATCATGGCCTCAGTTCCGAA1531090.20531501020896029No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTT1384860.18570596440312506No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG1321800.177249789688525No Hit
GTGGGCAAATTTAAAGTTGAACTAAGAT1129460.15145751812800837No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT1109340.14875948077853557No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT1014280.13601219298326309No Hit
ACGGGCTTTTTAACTGCAGCAACTTTAA999560.13403828096615378No Hit
CCACCAACTAAGAACGGCCATGCACCAC965900.12952456639442148No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA887890.11906363728744473No Hit
CGTTGGGTTGACAGTGAGGGTAATAATG870350.11671157093010118No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT869150.11655065418957596No Hit
GAGTCCGTCTTGCGCCGGTCCAAGAATT856990.11492003121892043No Hit
GCTGCTTTTAGGCCTACTATGGGTGTTA801920.10753529380165075No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA780040.10460124523274099No Hit
CCTCTATATAAATGCGTAGGGGTTTTAG774830.10390259838429401No Hit
GGGCATCACAGACCTGTTATTGCTCAAT770960.10338364189610019No Hit

[OK]Adapter Content

Adapter graph