FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005308651

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308651
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74315114
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACCTACTAAGAACGGCCATGCACCAC2696660.3628683123597173No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA2323420.31264434311437644No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC2294830.30879721182961517No Hit
CGTTCGTTATCGGAATTAACCAGACAAA1559770.20988597285876462No Hit
CCCTCCTAATCATGGCCTCAGTTCCGAA1526800.20544945944643236No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTT1389850.18702117580012056No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG1319580.17756549495436422No Hit
GTGGGCAAATTTAAAGTTGAACTAAGAT1119630.15065979714436017No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT1099840.14799681259992414No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT996460.134085779643694No Hit
ACGGGCTTTTTAACTGCAGCAACTTTAA994990.13388797331320784No Hit
CCACCAACTAAGAACGGCCATGCACCAC971900.13078093374114988No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA885420.11914400077486258No Hit
CGTTGGGTTGACAGTGAGGGTAATAATG862820.11610289664629997No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT861090.11587010416212239No Hit
GAGTCCGTCTTGCGCCGGTCCAAGAATT854510.11498468534947008No Hit
GCTGCTTTTAGGCCTACTATGGGTGTTA796690.10720430301701482No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA774600.10423182557453925No Hit
GGGCATCACAGACCTGTTATTGCTCAAT771480.10381199173024212No Hit
CCTCTATATAAATGCGTAGGGGTTTTAG766070.10308401060920125No Hit

[OK]Adapter Content

Adapter graph