FastQCFastQC Report
Thu 12 May 2022
EGAF00005308701

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308701
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences111049354
Sequences flagged as poor quality0
Sequence length28
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGA3230790.2909328045258147No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC2893620.26057062880347776No Hit
CCACCTACTAAGAACGGCCATGCACCAC2236090.20136001871744344No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT2087860.18801189964598983No Hit
CGTTCGTTATCGGAATTAACCAGACAAA1731270.15590095193169698No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT1588520.1430463071401568No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG1429090.1286896274966174No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA1199230.10799072275557767No Hit
CCCTCCTAATCATGGCCTCAGTTCCGAA1197920.10787275718866406No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA1128360.10160887563560252No Hit
GTGGGCAAATTTAAAGTTGAACTAAGAT1118390.10071107662634399No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)