FastQCFastQC Report
Sun 5 Jun 2022
EGAF00005308707

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308707
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences111505905
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGA3251450.2915944227348318No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC2925650.26237623917764713No Hit
CCACCTACTAAGAACGGCCATGCACCAC2241740.20104226767183314No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT2084120.1869066934168195No Hit
CGTTCGTTATCGGAATTAACCAGACAAA1730290.15517474164260628No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT1605600.143992374215518No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG1455980.13057425075380535No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA1201980.10779518806649747No Hit
CCCTCCTAATCATGGCCTCAGTTCCGAA1195790.10724006051518079No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA1127560.10112110206181457No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)