FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005308711

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308711
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74782678
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGA3009470.40242875495846775No Hit
CCACCTACTAAGAACGGCCATGCACCAC2788210.372841689354853No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC2025040.27078998160509843No Hit
CGTTCGTTATCGGAATTAACCAGACAAA1763670.23583937446048667No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG1499380.20049830256145684No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT1403290.1876490702833616No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT1264590.1691019944485005No Hit
TTCGGTCTTGATTAATGAAAACATTCTT1090270.14579178349296343No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT1086620.1453037025499408No Hit
CCCTCCTAATCATGGCCTCAGTTCCGAA1063150.14216527522590192No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA1004370.13430516623114244No Hit
GTGGGCAAATTTAAAGTTGAACTAAGAT999750.13368737610600145No Hit
ACGGCCATGCACCACCACCCACGGAATC934110.124909942379972No Hit
TACGGGCGGTGTGTACAAAGGGCAGGGA915820.1224641888326064No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTT866610.11588378795421048No Hit
CGACCTTTAAGTTTCAGCTTTGCAACCA834580.11160071052817871No Hit
TGCCCTACAATGGATCCTCGTTAAAGGA820280.10968850299798037No Hit
CCACCAACTAAGAACGGCCATGCACCAC805710.10774019085007895No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)