FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005308713

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308713
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences75077903
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGA3032810.4039550758363616No Hit
CCACCTACTAAGAACGGCCATGCACCAC2799570.37288867804419096No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC2023760.26955467842515524No Hit
CGTTCGTTATCGGAATTAACCAGACAAA1777710.23678205290310253No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG1499470.19972188088417972No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT1421560.18934465977292947No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT1278970.17035238717309406No Hit
TTCGGTCTTGATTAATGAAAACATTCTT1094250.14574860994719044No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT1085440.1445751621485752No Hit
CCCTCCTAATCATGGCCTCAGTTCCGAA1072470.1428476232214424No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA1010940.1346521359287299No Hit
GTGGGCAAATTTAAAGTTGAACTAAGAT1002290.13349999932736534No Hit
ACGGCCATGCACCACCACCCACGGAATC933560.1243455081583725No Hit
TACGGGCGGTGTGTACAAAGGGCAGGGA914380.12179082838794791No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTT867910.11560125753645517No Hit
CGACCTTTAAGTTTCAGCTTTGCAACCA839660.11183849927188297No Hit
TGCCCTACAATGGATCCTCGTTAAAGGA832270.11085418834886744No Hit
CCACCAACTAAGAACGGCCATGCACCAC803020.10695823510147853No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)