FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005308733

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308733
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53150004
Sequences flagged as poor quality0
Sequence length28
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGA1511290.2843442871612954No Hit
CCACCTACTAAGAACGGCCATGCACCAC966830.1819059129327629No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC921000.17328314782441032No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA691570.13011664119536095No Hit
CGTTCGTTATCGGAATTAACCAGACAAA608210.11443272892321889No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT588140.11065662384522115No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA564730.106252108654592No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT535470.10074693503315635No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)