FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005308763

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308763
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45007781
Sequences flagged as poor quality0
Sequence length28
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGA1700390.3777991187790396No Hit
CGTTCGTTATCGGAATTAACCAGACAAA1473510.3273900572880942No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC1457170.32375957392789484No Hit
CCACCTACTAAGAACGGCCATGCACCAC1397970.31060629272080753No Hit
CCCTCCTAATCATGGCCTCAGTTCCGAA1129330.25091883556756556No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT1065590.2367568398895293No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG1050010.23329521622050195No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT903740.20079639118400439No Hit
GTGGGCAAATTTAAAGTTGAACTAAGAT708020.1573105770311138No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT672220.14935639684169277No Hit
GTGCGGTGTGTACAAAGGGCAGGGACTT668040.14842766854024642No Hit
ACGGCCATGCACCACCACCCACGGAATC652440.14496160119513557No Hit
GAGTCCGTCTTGCGCCGGTCCAAGAATT619140.13756288051614898No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA577200.128244491769101No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA560470.12452735672527379No Hit
TGCCCTACAATGGATCCTCGTTAAAGGA541160.12023698746667826No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTT523700.1163576582458042No Hit
GCAGCCATACTCCCCCCGGAACCCAAAG519750.11548003221931781No Hit
CCACCAACTAAGAACGGCCATGCACCAC490250.10892560999619155No Hit
TACGGGCGGTGTGTACAAAGGGCAGGGA463860.1030621794040457No Hit
CGTTGGGTTGACAGTGAGGGTAATAATG461390.1025133854077365No Hit
TTCGGTCTTGATTAATGAAAACATTCTT457240.10159132262041536No Hit
CCCTCCTTTAAGTTTCAGCTTTGCAACC451780.10037819904962655No Hit

[OK]Adapter Content

Adapter graph