FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005308785

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308785
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54991689
Sequences flagged as poor quality0
Sequence length28
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGA1568700.2852612873919912No Hit
CCACCTACTAAGAACGGCCATGCACCAC1002090.18222571778073593No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC942860.17145499931816968No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA714750.1299741857355936No Hit
CGTTCGTTATCGGAATTAACCAGACAAA634000.1152901486622824No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT615860.11199146838352246No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA587940.10691433754653362No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT553660.10068066830971495No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)