FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005308787

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308787
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54872478
Sequences flagged as poor quality0
Sequence length28
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGA1566660.2855092492815797No Hit
CCACCTACTAAGAACGGCCATGCACCAC996220.18155185191381368No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC945990.17239790045567105No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA714640.13023650945743695No Hit
CGTTCGTTATCGGAATTAACCAGACAAA632290.1152289860137171No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT615910.11224388298993895No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA587730.10710833944842074No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT557860.10166480908698892No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)