FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005308835

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308835
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64893198
Sequences flagged as poor quality0
Sequence length28
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACCTACTAAGAACGGCCATGCACCAC1458060.22468610654694504No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA1318300.20314918059670906No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC1281620.19749681623026188No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA1139020.17552224810988665No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG935890.1442200459900281No Hit
CGTTCGTTATCGGAATTAACCAGACAAA848850.13080723807139233No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT776430.11964736273283988No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA705060.10864929171775445No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT670220.10328047016576376No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)