FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005308845

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308845
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67907385
Sequences flagged as poor quality0
Sequence length28
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACCTACTAAGAACGGCCATGCACCAC1522850.2242539600074425No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA1386040.2041074030460752No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC1335500.19666491354364476No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA1201130.17687766949058634No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG995420.14658494065115305No Hit
CGTTCGTTATCGGAATTAACCAGACAAA896800.13206221974237412No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT806630.11878384066769762No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA743650.1095094443704466No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT693120.10206842746190271No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)