FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005308849

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308849
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68349532
Sequences flagged as poor quality0
Sequence length28
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACCTACTAAGAACGGCCATGCACCAC1529480.2237732951851082No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA1392320.20370585712276715No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC1329230.19447536231850132No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA1205530.17637721352649496No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG1000910.14643992002754314No Hit
CGTTCGTTATCGGAATTAACCAGACAAA904630.13235350316663472No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT819290.11986768248830146No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA754450.11038115081753595No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT697020.10197875239292055No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)