FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005308859

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308859
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80707939
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGA2943570.36471876701002115No Hit
CGTTCGTTATCGGAATTAACCAGACAAA2652900.3287037226907752No Hit
CCACCTACTAAGAACGGCCATGCACCAC2637390.3267819786601167No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC2291830.28396586858698003No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG1817830.22523558679896408No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT1703280.21104243536686026No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT1612850.19983783751434914No Hit
GGCGACTTTTACTTCCTCTAGATAGTCA1397130.17310936412339809No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT1363110.16889416541785313No Hit
CCCTCCTAATCATGGCCTCAGTTCCGAA1168850.1448246621686127No Hit
CCACCAACTAAGAACGGCCATGCACCAC988460.12247370113118612No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA959810.1189238644788092No Hit
TGCCCTACAATGGATCCTCGTTAAAGGA898390.11131370855598233No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTT864380.10709974888591814No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)