FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005308863

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308863
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences84019360
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGA3100130.3689780545817059No Hit
CGTTCGTTATCGGAATTAACCAGACAAA2762550.3287992196084331No Hit
CCACCTACTAAGAACGGCCATGCACCAC2739240.3260248590324896No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC2343840.27896427680477454No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG1923040.22888058180876408No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT1775220.2112870176587872No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT1689820.20112269362680218No Hit
GGCGACTTTTACTTCCTCTAGATAGTCA1479560.17609750895507892No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT1417720.16873730054596942No Hit
CCCTCCTAATCATGGCCTCAGTTCCGAA1256420.14953934426541693No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA1037660.12350248799800427No Hit
CCACCAACTAAGAACGGCCATGCACCAC1015810.12090189689614393No Hit
TGCCCTACAATGGATCCTCGTTAAAGGA983780.11708968028321093No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTT900520.10718005945296417No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)