EGAF00005309974 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005309974
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	70273767
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	35695	0.0	12.031407	1
TCGGAAG	37775	0.0	11.366992	2
CGGAAGA	40355	0.0	10.779071	3
TATGCCG	10855	0.0	8.868898	45-49
CTCGTAT	12890	0.0	7.5140066	40-44
CGTATGC	12960	0.0	7.394824	45-49
TCTCGTA	12910	0.0	7.311437	40-44
ATGCCGT	15165	0.0	6.520387	45-49
TCGTATG	15035	0.0	6.335924	40-44
GCCGTCT	16205	0.0	6.0482435	50-54
AGAGCAC	79180	0.0	5.9969277	7
TGCCGTC	15945	0.0	5.874074	45-49
AGCACAC	82240	0.0	5.782608	9
ATCTCGT	17230	0.0	5.7643895	40-44
GAGCACA	86245	0.0	5.6569734	8
GAAGAGC	89410	0.0	5.5459123	5
AGATCGG	34100	0.0	5.4463487	145
CGTCTTC	20220	0.0	5.14126	50-54