EGAF00005310059 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005310059
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	74868247
Sequences flagged as poor quality	0
Sequence length	151
%GC	42

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

$Adapter graph$

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	8070	0.0	8.532652	145
CGCCGTA	18760	0.0	7.5013733	55-59
GCCGTAT	21025	0.0	6.8173356	55-59
ATATCGG	6735	0.0	6.777631	7
GATGTCG	9000	0.0	6.76257	6
TCGCCGT	21435	0.0	6.5787554	55-59
AGCGTCG	80545	0.0	6.3149853	9
GCGTAGA	8910	0.0	6.062823	1
CGTATCA	24360	0.0	6.049931	60-64
ATGTCGG	9740	0.0	5.802439	7
GAGCGTC	89740	0.0	5.7325425	8
ATTTCGG	11815	0.0	5.5192976	7
TATCGGG	5515	0.0	5.5179625	8
GTCGCCG	26295	0.0	5.5061336	55-59
AGAGCGT	98110	0.0	5.4355006	7
TGGTCGC	27460	0.0	5.368417	50-54
CGTCGTG	73820	0.0	5.13525	145
GTGGTCG	30110	0.0	5.0259194	50-54
GTCGGTG	10575	0.0	5.0016847	9