EGAF00005310061 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005310061
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	51373754
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCCGTA	5455	0.0	7.6546535	55-59
AGCGTCG	26540	0.0	6.747844	145
TCGCCGT	6555	0.0	6.458594	55-59
TCGTGTA	25665	0.0	6.158632	145
GAGCGTC	32085	0.0	5.76245	145
CGTCGTG	24450	0.0	5.7529674	145
GTCGCCG	7740	0.0	5.6945634	55-59
AGATCGG	43170	0.0	5.660006	145
GATCGGA	39955	0.0	5.6436267	145
GCGTCGT	24465	0.0	5.5302444	140-144
GCCGTAT	8055	0.0	5.471871	55-59
CGGAAGA	44625	0.0	5.3779755	145
CGTGTAG	26310	0.0	5.3462577	145
TCGGAAG	42730	0.0	5.277115	145
AAGAGCG	41820	0.0	5.1318827	145
GTCGTGT	25980	0.0	5.1240273	140-144
ATCGGAA	42115	0.0	5.0442877	145
TAGATCG	15285	0.0	5.0187798	140-144