EGAF00005310093 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005310093
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	103770567
Sequences flagged as poor quality	0
Sequence length	151
%GC	42

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	9065	0.0	8.717667	145
CGCCGTA	14015	0.0	8.349496	55-59
TCGCCGT	17430	0.0	6.8883114	55-59
AGCGTCG	73155	0.0	6.2330723	9
GCCGTAT	19685	0.0	6.202353	55-59
GTCGCCG	19975	0.0	6.1268253	55-59
CGTCGTG	66685	0.0	5.7622128	145
GTCGTGT	69580	0.0	5.532885	145
GAGCGTC	85225	0.0	5.47831	8
GATCGGA	104310	0.0	5.4422364	145
AGATCGG	112100	0.0	5.413292	145
CGTATCA	23850	0.0	5.404608	60-64
GCGTCGT	67880	0.0	5.395692	140-144
TCGTGTA	67700	0.0	5.3438396	145
CGTGTAG	68410	0.0	5.320173	145
TAGATCG	39610	0.0	5.308047	145
TGGTCGC	23555	0.0	5.294028	50-54
ATCGGAA	108470	0.0	5.2602534	145
AGAGCGT	93205	0.0	5.048162	7