FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005310329

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005310329
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8396204
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTATA8400.018.987145
TTCGCCG13150.016.538969145
GCCGTAA8151.7716957E-913.342788145
AGGGGGG104400.010.207744145
CGTATCA170800.08.480503140-144
AAAAGGG130050.08.417431145
CGCCGTA198700.08.318594145
CGTCGTT10508.4998625E-58.285235145
AAGGGGG98000.08.06331145
CCGTATC183650.07.973948145
GTATCAT195250.07.7601156145
GTCGCCG236400.07.7586465145
GCCGTAT193550.07.7533627145
AAAGGGG110850.07.651791145
GGTCGCC251600.07.5204325145
TCATTAA210300.07.4116025145
TCGCCGT215650.07.308429140-144
ATCATTA194600.07.2272296145
TATCATT209550.07.195958145
CATTAAA218250.07.0087595145
Produced by FastQC (version 0.11.5)