FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005310344

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005310344
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15503396
Sequences flagged as poor quality0
Sequence length151
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGGGGG946250.020.688255145
ATGCCGG47200.012.749763145
AAGGGGG302000.012.628297145
AGGGGGG281450.012.416862145
AGAAATG228050.011.986082145
AAAAGGG357400.011.25912145
GAAATCG42800.010.672418145
AAAGGGG381550.09.90039145
CGTCTTG67000.08.981922145
CACATTA91400.08.805272145
CTTGAAA692150.08.568782145
AAAAAGG489350.08.519504145
GCTTGAA778050.07.79049145
TGCTTGA807400.07.597096145
CGCGTAG25001.4006218E-107.24927473
TCGATAA10050.00421255647.21309237
TGAAAAA793400.07.2102585145
TTGAAAA755500.07.101715145
CCGTCTT1074200.07.053378145
GCCGTCT1130200.06.9220085145
Produced by FastQC (version 0.11.5)