FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005310370

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005310370
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14719469
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG7650.024.70575345
CGTATGC9700.019.25313243
CTCGTAT10050.019.0302741
TCTCGTA10300.018.34985440
TCGTATG10600.017.8305842
ATCGGAA11400.016.795631
ATCTCGT12150.016.11190439
ACACGTC11900.015.88043612
CGTTGGA38350.015.213061
TCGGAAG13100.014.5990612
AACGGGA33050.014.3628658
ACGGGAT23400.013.9406249
AAACGGG42650.013.7673427
CGTCTGA14000.013.49841715
GAAACGG43950.013.0529886
GGAAACG44250.012.7624715
CGGAAGA15450.012.5241213
ACGTCTG14950.012.49013114
CGGGATT23750.011.93540110
CACGTCT17550.011.40884113
Produced by FastQC (version 0.11.5)