EGAF00005310447 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005310447
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	12122361
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATGCCG	80509	0.664136301501003	TruSeq Adapter, Index 9 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	9725	42.921936	45
GTCACGA	10910	38.125164	28
ATCGGAA	11125	38.114624	1
CTCGTAT	10845	38.108215	41
CGTATGC	10985	37.949913	43
CGATCAG	10955	37.92796	32
TCTCGTA	10075	37.891342	40
TCGTATG	11025	37.751007	42
TCGGAAG	11245	37.611088	2
CGTCTGA	11210	37.546974	15
ACACGTC	11165	37.537117	12
TCACGAT	11120	37.425407	29
ACGATCA	11150	37.264187	31
AGTCACG	11160	37.250954	27
ATCTCGT	10245	37.17476	39
CGGAAGA	11420	37.034737	3
ACGTCTG	11405	36.786655	14
CACGTCT	11690	36.024513	13
CACGATC	11670	35.796505	30
GCACACG	11760	35.6182	10