FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005310469

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005310469
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5183895
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA12300.011.7201941
ACGGGAT7950.010.7530469
ACCGTGC5450.010.32059131
CGGGATA2302.0568026E-49.78108810
AACGGGA11300.09.755128
AAACGGG13350.09.4367357
CCGTGCC6200.09.43547332
CCGGCTA6450.09.41995838
GCGTGAG13200.09.37408522
CCGAGTA8200.09.3285382
CGCCACC7200.09.06266527
GGAAACG14650.09.0600255
CCACCGT7250.09.00025129
CGGCTAA6401.8189894E-128.79049539
CCGCCAC5659.094947E-118.76113726
ACAGGCG18100.08.70047418
CCCAAGT24650.08.6809371
CGCCCGG6501.8189894E-128.65408735
CGGGATT7850.08.5973910
GAGCCAC36200.08.45311226
Produced by FastQC (version 0.11.5)