Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005310489 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 23926908 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGCCG | 31199 | 0.13039294504747542 | TruSeq Adapter, Index 1 (100% over 51bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 26370 | 0.0 | 41.91104 | 45 |
GATCGGA | 6825 | 0.0 | 40.711193 | 1 |
ATCGGAA | 34895 | 0.0 | 35.54419 | 1 |
TCGGAAG | 35085 | 0.0 | 35.344505 | 2 |
CGGAAGA | 35645 | 0.0 | 34.81033 | 3 |
ACACGTC | 35830 | 0.0 | 34.453045 | 12 |
CGTCTGA | 35890 | 0.0 | 34.30142 | 15 |
CATCTCG | 28075 | 0.0 | 34.02747 | 38 |
ACGTCTG | 36505 | 0.0 | 33.79134 | 14 |
CACGTCT | 36655 | 0.0 | 33.702156 | 13 |
GTATGCC | 33455 | 0.0 | 33.377342 | 44 |
GCACACG | 37095 | 0.0 | 33.33273 | 10 |
CACACGT | 37560 | 0.0 | 32.90808 | 11 |
CGTATGC | 34245 | 0.0 | 32.587715 | 43 |
CTCGTAT | 35095 | 0.0 | 31.618605 | 41 |
TCGTATG | 35385 | 0.0 | 31.550554 | 42 |
CTTAGGC | 30580 | 0.0 | 31.540535 | 32 |
TCTCGTA | 35190 | 0.0 | 31.489347 | 40 |
ATCTCGT | 35550 | 0.0 | 31.100391 | 39 |
ACTTAGG | 31650 | 0.0 | 30.510868 | 31 |