FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005310502

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005310502
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4392252
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA11100.013.9889391
AACGGGT3501.0913936E-1112.2133678
AAACGGG12850.012.0808037
ACGGGAT7300.011.4029939
GAAACGG12850.011.3804666
AACGGGA10050.011.1931898
CGGGATT6600.010.90814710
CCCGATT1450.006832972610.8613772
GGAAACG12600.010.5360025
ACGGGTT2952.4615583E-69.9142849
CGATTCA1900.00462173769.4739435
GCGTGAG12050.09.33518522
CGGGAAT4601.5697879E-99.29267410
GCCACCG11050.08.95962228
CCCCGGT2606.994281E-48.6553641
ACAGGCG16950.08.62688418
CGTGAGC12350.08.56220723
TGCGCCC2952.6376633E-48.39101533
CGCCACC6755.456968E-128.33346627
CACCGCG4601.4393845E-78.31629830
Produced by FastQC (version 0.11.5)