Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005310520 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 6206345 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGCCG | 11404 | 0.1837474391127145 | TruSeq Adapter, Index 1 (100% over 51bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 1495 | 0.0 | 39.886562 | 45 |
CTCGTAT | 1690 | 0.0 | 34.614346 | 41 |
ATCGGAA | 1770 | 0.0 | 34.607292 | 1 |
ACACGTC | 1770 | 0.0 | 34.192234 | 12 |
CGTATGC | 1750 | 0.0 | 33.814087 | 43 |
TCGTATG | 1760 | 0.0 | 33.621418 | 42 |
TCGGAAG | 1825 | 0.0 | 33.425842 | 2 |
TCTCGTA | 1545 | 0.0 | 32.76495 | 40 |
CGTCTGA | 1850 | 0.0 | 32.470688 | 15 |
CGGAAGA | 1950 | 0.0 | 31.745161 | 3 |
ACGTCTG | 1975 | 0.0 | 30.529251 | 14 |
CACGTCT | 1995 | 0.0 | 30.11042 | 13 |
TCACGAT | 1710 | 0.0 | 29.8668 | 34 |
ATCTCGT | 1785 | 0.0 | 28.35958 | 39 |
GCACACG | 2235 | 0.0 | 27.481066 | 10 |
CACACGT | 2205 | 0.0 | 27.446827 | 11 |
CATCACG | 2190 | 0.0 | 27.122036 | 32 |
GTATGCC | 2200 | 0.0 | 27.104734 | 44 |
ACGATCT | 1915 | 0.0 | 26.434597 | 36 |
ATCACGA | 2270 | 0.0 | 26.06708 | 33 |