FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005310540

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005310540
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14725029
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCCCG5950.023.06648834
CCGATCT7300.017.87686738
CCCGATC7100.017.43014337
TCCCGAT7850.016.62474436
CGTATGC8150.016.012345
GTCCCGA8500.014.82300435
ATCGGAA10000.014.4038431
ACCCGTC9550.014.37146231
CTCGTAT8800.014.06348143
TCTCGTA9300.013.79147342
TCGGAAG10900.013.625962
TCACCCG10100.013.36604529
CACCCGT10300.013.32495130
CCGTCCC10900.013.00425733
ACACGTC10450.012.91750112
TCGTATG10300.012.88885544
CGTCTGA11050.012.2161815
ACGGGAT21250.011.9633069
GATCGGA4150.011.9308941
CCCGTCC12000.011.62478532
Produced by FastQC (version 0.11.5)