EGAF00005310558 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005310558
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	11969135
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTCCCGATCTCGTATGC	79611	0.6651357846661434	TruSeq Adapter, Index 16 (97% over 39bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	9905	41.006775	45
ATCGGAA	10680	39.403515	1
TCGGAAG	10840	38.745953	2
CGTCCCG	10590	38.57676	34
CTCGTAT	10615	38.044037	43
ACACGTC	10950	37.842632	12
TCTCGTA	9875	37.842052	42
GTCCCGA	10725	37.75573	35
TCGTATG	10755	37.66127	44
CCCGATC	9965	37.339275	37
ACCCGTC	10930	37.33512	31
CGGAAGA	11270	37.327507	3
TCCCGAT	10015	37.287636	36
CCGATCT	9965	37.248974	38
CACCCGT	10940	37.239304	30
CGTCTGA	11125	37.12603	15
TCACCCG	11040	36.92237	29
CCGTCCC	11150	36.800682	33
ATCTCGT	10110	36.762314	41
ACGTCTG	11295	36.686752	14