FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005310617

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005310617
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3935019
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCCCG1550.024.67966334
GTCCCGA2150.017.79231635
CGTATGC2053.6379788E-1217.56257245
CCGATCT2201.2732926E-1116.36595738
TCTCGTA2201.2732926E-1116.36595742
CTCGTAT2201.2732926E-1116.36533443
TCCCGAT2251.8189894E-1116.00186236
CCCGATC2302.5465852E-1115.65399537
ACCCGTC2509.640644E-1114.40149231
AACGGGT2702.1827873E-1114.1648948
TCGTATG2551.3278623E-1014.11911144
CGTTGGA8800.013.5661631
CACCCGT2703.2923708E-1013.33471630
ATCTCGT3001.2732926E-1012.75180841
ATCGGAA2653.4888217E-912.7499711
TCACCCG3152.8921932E-1012.14411529
AAACGGG10550.011.9416347
ACACGTC2851.0479198E-811.84002212
CGGAAGA3254.8930815E-1011.7685063
ACGGGAT6750.011.6646159
Produced by FastQC (version 0.11.5)