EGAF00005310624 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005310624
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	16739481
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGCCG	1345473	8.037722316480421	TruSeq Adapter, Index 7 (100% over 51bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCAACTCGTATGCCG	45700	0.2730072694607437	TruSeq Adapter, Index 7 (98% over 51bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGCC	23865	0.14256714410679758	TruSeq Adapter, Index 7 (100% over 51bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCACCTCGTATGCCG	19348	0.1155830339064873	TruSeq Adapter, Index 7 (98% over 51bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCAGCTCGTATGCCG	17614	0.10522428980922406	TruSeq Adapter, Index 7 (98% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	154220	44.2619	1
TCGGAAG	155185	43.90411	2
TATGCCG	152245	43.82115	45
CGGAAGA	155535	43.719975	3
ACACGTC	155250	43.3878	12
GCACACG	155710	43.327007	10
CGTCTGA	155280	43.315674	15
CACACGT	156010	43.245136	11
ACGTCTG	155490	43.24415	14
CACGTCT	155780	43.222855	13
CTCGTAT	155045	42.851093	41
CGTATGC	155855	42.838505	43
TCGTATG	155440	42.808144	42
TCTCGTA	145660	42.77897	40
AGAGCAC	158500	42.75311	7
ATCTCGT	145510	42.738037	39
CATCTCG	145785	42.679276	38
GAAGAGC	159180	42.643955	5
AGCACAC	158510	42.635456	9
GAGCACA	158890	42.571712	8