FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005310653

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005310653
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9903673
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCCCG12450.036.86946534
CGTATGC13450.034.63047445
GTCCCGA13700.033.50698535
TCCCGAT13350.032.5313336
CTCGTAT14050.032.5108243
CCCGATC13750.031.42098837
CCGATCT13700.031.37110138
TCGTATG14650.031.17947444
TCTCGTA13900.031.08097342
ACCCGTC15550.029.95248231
CACCCGT15900.029.15163630
CGTCTGA16300.028.4313815
ATCTCGT15250.028.18341841
TCACCCG16550.028.00629
ACACGTC16900.027.68821112
CCCGTCC17150.027.15808132
CCGTCCC17200.027.07858533
ACGTCTG18150.025.40946614
CACGTCT19000.024.62793713
GCACACG22200.021.58464610
Produced by FastQC (version 0.11.5)